Pseudotimede github
WebApr 29, 2024 · Here we propose PseudotimeDE, a DE gene identification method that adapts to various pseudotime inference methods, accounts for pseudotime inference uncertainty, and outputs well-calibrated p-values. Comprehensive simulations and real-data applications verify that PseudotimeDE outperforms existing methods in false discovery rate control … WebThe pseudotimeDE R package (Song and others, 2024) does allow for an arbitrary pseudotime estimation technique, but it fits negative binomial generalized additive models (GAMs) by default, and...
Pseudotimede github
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WebJun 20, 2024 · GitHub is where people build software. More than 94 million people use … WebNov 17, 2024 · Finally, PseudotimeDE calculates a right-tail p-value for the gene from the gene’s test statistic in the original dataset and the approximate null distribution. Further detail of PseudotimeDE is described in Methods. Simulations verify that pseudotimeDE outperforms existing methods in the validity of p-values and the identification power.
WebMar 27, 2024 · PseudotimeDE is flexible in allowing users to specify the pseudotime inference method and to choose the appropriate model for scRNA-seq data. Comprehensive simulations and real-data applications verify that PseudotimeDE provides well-calibrated p -values essential for controlling FDR and downstream analysis and that PseudotimeDE is … WebPseudotime is a measure of how much progress an individual cell has made through a process such as cell differentiation. In many biological processes, cells do not progress in perfect synchrony. In single-cell expression studies of processes such as cell differentiation, captured cells might be widely distributed in terms of progress.
WebSep 29, 2024 · GitHub SONGDONGYUAN1994/PseudotimeDE: Inference of differential … WebApr 29, 2024 · PseudotimeDE outperforms four state-of-the-art methods (tradeSeq, …
http://jsb.ucla.edu/sites/default/files/news/PseudotimeDE_poster.pdf
WebApr 29, 2024 · Here we propose PseudotimeDE, a DE gene identification method that adapts to various pseudotime inference methods, accounts for pseudotime inference uncertainty, and outputs well-calibrated p -values. Comprehensive simulations and real-data applications verify that PseudotimeDE outperforms existing methods in false discovery rate control … passo profil bilgileri güncellemeWebWe proposed PseudotimeDE, a differentially expressed (DE) gene identification method that adapts to various pseudotime inference methods, accounts for pseudotime inference uncertainty, and outputs well-calibrated p-values. Learn more in … お盆 お花 プレゼントWebApr 22, 2024 · Here we propose PseudotimeDE, a DE gene identification method that adapts to various pseudotime inference methods, accounts for pseudotime inference uncertainty, and outputs well-calibrated p -values. Comprehensive simulations and real-data applications verify that PseudotimeDE outperforms existing methods in false discovery rate control … お盆 お花代 お返しWebApr 29, 2024 · PseudotimeDE yields the FDP closest to 0.05. d, i ROC curves and AUROC values of the five DE methods. PseudotimeDE achieves the highest AUROC. e, j Power of the five DE methods under the FDP = 0. ... お盆 お花代 相場WebR code for temporal phenotyping via Topological Data Analysis and Pseudo Time - GitHub … お盆 お花 造花WebOct 1, 2016 · Motivation: Repeated cross-sectional time series single cell data confound … passo principeWebMar 27, 2024 · PseudotimeDE is flexible in allowing users to specify the pseudotime … passo presena